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12th Annual Symposium
October 31-
November 2, 2014
in Kansas City

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Alexander, H.M., Mauck, K.E., Whitfield, A.E., Garrett K.A. and C.M. Malmstrom. 2014. Plant-virus interactions and the agro-ecological interface. (In Press, European Journal of Plant Pathology).

Darby, BJ, Herman, MA. 2014. Effect of prey richness on a consumer’s growth rate. Oecologia (in press).

Dietzgen, R.G., Kuhn, J.H., Clawson, A.N., Freitas-Astúa, J., Goodin, M.M., Kitajima, E., Kondo, H., Wetzel, T., Whitfield, A.E. 2014. Dichorhavirus – a proposed new genus for Brevipalpus mite-transmitted, nuclear, bacilloform, bipartite, negative-strand RNA plant viruses. (In Press, Archives of Virology).


Carlson, AL, H Gong, C Toomajian, RJ Swanson. Parental genetic distance and patterns in nonrandom mating and seed yield in predominantly selfing Arabidopsis thaliana. Plant Reproduction 26:317-328 (2013). (doi:10.1007/s00497-013-0228-5).

Coolon, JD, Jones, KL, Todd, TC, Blair, JM, Herman, MA. 2013 Long-term nitrogen amendment alters soil bacterial diversity and assemblage in tallgrass prairie. PLoS One, Jun 28;8(6):e67884

Darby, BJ, Todd, TC, Herman, MA. 2013. High-throughput amplicon sequencing of rRNA genes requires a copy number correction to accurately reflect the effects of management practices on soil nematode community structure. Mol. Ecol., 22:5456-54-71, DOI:10.1111/mec.12480.

De Hoff, PL, Ferris, P, Olson, BJSC, Miyagi, A, Geng, S, Umen, JG. 2013. Species and population level molecular profiling reveals cryptic recombination and emergent asymmetry in the dimorphic mating locus of C. reinhardtii. PLoS genetics 9(8), e1003724.

DiRienzo, N. and J.L. Marshall. 2013. Function of the hemolymph nuptial gift in the ground cricket, Allonemobius socius. Ethology 119:104-109. (KAES contribution #:12-178-J).

Elbeaino, T., Whitfield, A.E., Sharma, M., Digiaro, M. 2013. Emaravirus-specific degenerate PCR primers allowed the identification of partial RNA-dependent RNA polymerase sequences of Maize red stripe virus and Pigeonpea sterility mosaic virus. Journal of Virological Methods 188: 37-40.

Gomez-Montano, L, Jumpponen, A, Gonzales, MA, Cusicanqui, J, Valdivia, C, Motavelli, PP, Herman, M, Garrett, KA. 2013. Do bacterial and fungal communities in soils of the Bolivian Altiplano change under shorter fallow periods? Soil Biology and Biochemistry 65:50-59.

Hamaji, T, Smith, DR, Noguchi, H, Toyoda, A, Suzuki, M, Kawai-Toyooka, Fujiyama, A, Nishii, I, Marriage, T, Olson, BJSC, Nozaki, H. 2013. Mitochondrial and Plastid Genomes of the Colonial Green Alga Gonium pectorals Gives Insights into the Origins of Organelle DNA Architecture within the Volvocales. PLoS One 8 (2), e57177.

Jacobson, A.L., Johnston, S., Rotenberg, D., Whitfield, A.E., Booth, W., Vargo, E.L., Kennedy, G.G. 2013. Genome size and ploidy of Thysanoptera. Insect Molecular Biology 22:12-17.

Lounsberry ZT, Ungerer MC, Snyder BA. (2013) Identification of 12 EST-derived SSR markers in Lubricus rubellus.  Pedobiologia 56:191-193

Nachappa, P., Margolies, D.C., Nechols, J.R., Whitfield, A.E., and Rotenberg, D. 2013. Tomato spotted wilt virus benefits a non-vector arthropod, Tetranychus urticae, by modulating different plant responses in tomato. PLoS ONE 8 (9):e75909.

Smith, DR, Hamaji, T, Olson, BJSC, Durand, PM, Ferris, P, Michod, RE, et al. (2013) Organelle genome complexity scales positively with organism size in volvocine green algae. Molecular biology and evolution 30 (4), 793-797.

Ungerer MC and Kawakami T. (2013) Transcriptional dynamics of LTR retrotransposons in early generation and ancient sunflower hybrids. Genome Biol. Evol. 5:329-337

Ungerer MC, Weitekamp CA, Joern A, Towne EG, Briggs JM. (2013) Genetic variation and mating success in managed American plains bison. Journal of Heredity 104:182-191

Yao, J., Rotenberg, D., Afsharifar, A., Barandoc-Alviar K., Whitfield, A.E. 2013 Development of RNAi methods for Peregrinus maidis, the corn planthopper. PLoS ONE 8 (8): e70243.


Badillo-Vargas, I., Rotenberg, D., Schneweis, D.J., Hiromasa, Y., Tomich, J.M., and Whitfield, A.E. 2012. Proteomic analysis of the first instar larvae of Frankliniella occidentalis, the insect vector of Tomato spotted wilt virus. Journal of Virology 86:8793-8809.

Civetta, A., J.M. Erin-Lopez, R. Kilathinal, and J.L. Marshall. 2012. The Evolution of Sex-related Traits and Genes. International Journal of Evolutionary Biology. Article ID 590769.

Cloyd, R.A., and Whitfield, A.E. 2012. The Western flower thrips and INSV complex. Grower Talks 76:62-66.

Fallis, L.C., J.J. Fanara, and T.J. Morgan (2012) Adaptive thermal plasticity among Drosophila populations. J. Evolutionary Biology. In press.

Fallis, L.C., J.J. Fanara, and T.J. Morgan (2012) Genetic variation in heat-stress tolerance among South American Drosophila populations. Genetica. DOI 10.1007/s10709-012-9635-z.

Garrett, KA, A Jumpponen, C Toomajian & L Gomez-Montano. Climate change and plant health: Designing research spillover from plant genomics for understanding the role of microbial communities. Canadian Journal of Plant Pathology 34:349-361 (2012) (doi:10.1080/07060661.2012.706832).

Horton, MW, AM Hancock, YS Huang, C Toomajian, S Atwell, A Auton, NW Muliyati, A Platt, FG Sperone, BJ Vilhjalmsson, M Nordborg, JO Borevitz & J Bergelson. Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics 44: 212-216 (2012); published online 08 January 2012 (doi:10.1038/ng.1042).

Marshall, J.L. and N. DiRienzo. 2012. Noncompetitive gametic isolation between sibling species of cricket: a hypothesized link between within-population incompatibility and reproductive isolation between species. International Journal of Evolutionary Biology. Article ID 593438 (KAES contribution #:13-164-J).

Not, F, Siano, R, Kooistra, WHCF, Simon, N, Vaulot, D, Probert, I, de Clerck, O, et al. 2012. 1 Diversity and Ecology of Eukaryotic Marine Phytoplankton. Advances in Botanical Research 64, 1-53.

Oppert, B., S.E. Dowd, P. Bouffard, L. Li, A. Conesa, M.D. Lorenzen, M. Toutges, J.L. Marshall, D. Huestis, J. Fabrick, C. Oppert and J.L. Jurat-Fuentes. 2012. Transcriptome profiling of the intoxication response of Tenebrio molitor larvae to Bacillus thuringiensis Cry3Aa protoxin. Plos One 7:334624.

Staton SE, Hartman-Bakken B, Blackman BK, Chapman MA, Kane NC, Tang S, Ungerer MC, Knapp SJ, Rieseberg LH, Burke JM. (2012) The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements. Plant Journal 72: 142-153

Umen, JG, Olson, BJSC. 2012. Genomics of volvocine algae. Genomic Insights into the Biology of Algae 64, 185-243.
Wheeler DC, Darby BD, Herman MA. 2012. Several grassland soil nematodes species are insensitive to RNA-mediated interference. Journal of Nematology, 44:92-101.


Civetta, A., J.M. Eirin-Lopez, R. Kulathinal, J.L. Marshall. 2011. The evolution of sex-related traits and genes. International Journal of Evolutionary Biology, Article ID 807218.

Darby, B.J., Jones, K.L., Wheeler, D., and Herman, M.A. 2011. Normalization and centering of array-based heterologous genome hybridization based on divergent control probes. BMC Bioinformatics 12, 183.

Gan, X, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, SJ Schultheiss, EJ Osborne, VT Sreedharan, A Kahles, R Bohnert, G Jean, P Derwent, P Kersey, EJ Belfield, NP Harberd, E Kemen, C Toomajian, PX Kover, RM Clark, G Rӓtsch & R Mott. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477: 419-423 (2011); published online 28 August 2011 (doi:10.1038/nature10414).

Hancock, AM, B Brachi, N Faure, MW Horton, LB Jarymowycz, FG Sperone, C Toomajian, F Roux & J Bergelson. Adaptation to climate across the Arabidopsis thaliana genome. Science 334:83-86 (2011). (doi:10.1126/science.1209244).

Kawakami T, Morgan TJ, Nippert JB, Ocheltree TW, Keith R, Dhakal P, Ungerer MC. (2011) Natural selection drives clinal life history patters in the perennial sunflower species, Helianthus maximiliani. Molecular Ecology 20:2318-2328.

Kawakami T, Dhakal P, Katterhenry AN, Heatherington CA, Ungerer MC. (2011) Transposable element proliferation and genome expansion are rare in contemporary sunflower hybrid populations despite widespread transcriptional activity of LTR retrotransposons. Genome Biol. Evol. 3:156-167

Marshall, J.L., D.L. Huestis, C. Garcia, Y. Hiromasa, S. Wheeler, S. Noh, J.M. Tomich, and D.J. Howard. 2011. Comparative proteomics uncovers the signature of natural selection acting on the ejaculate proteomes of two cricket species isolated by postmating, prezygotic phenotypes. Molecular Biology and Evolution 28:423-435. (KAES contribution #: 10-239-J).

Murugan, M.; Cardona, P. Sotelo; Duraimurugan, P.; Whitfield, A.E.; Schneweis, D.; Starkey, S.; Smith, C.M. 2011. Wheat Curl Mite Resistance: Interactions of Mite Feeding with Wheat Streak Mosaic Virus Infection. Journal of Economic Entomology 104: 1406-1414.

Westphal, M.F., J. Massie, J.M. Bronkema, B. Smith and T.J. Morgan (2011) Heritable variation in garter snake color patterns between populations in a postglacial landscape. PLoS One 6(9):e24199. doi:10.1371/journal.pone.0024199.

Westphal, M.F., S.R. Morey, J.C. Uyeda, and T.J. Morgan (2011) Molecular phylogeny of the subfamily Amphistichinae (Teleostei: Embiotocidae) reveals a convergent loss of red pigmentation in two rapidly evolving lineages of sand-dwelling surfperch. J. Fish Biol. doi:10.1111/j.1095-8649.2011.03011.x.

Whitfield, A.E., Rotenberg, D., Aritua, V., and Hogenhout, S.A. 2011. Analysis of expressed sequence tags from Maize mosaic rhabdovirus-infected gut tissues of Peregrinus maidis reveals the presence of key components of insect innate immunity. Insect Molecular Biology 20:225-242.

Zhen Y, Dhakal P, Ungerer MC. (2011) Fitness benefits and costs of cold acclimation in Arabidopsis thaliana. American Naturalist 178: 44-52


Hector, A., Y. Hautier, P. Saner, L. Wacker, R. Bagchi, J. Joshi, M. Scherer-Lorenzen, B. Schmid, E. M. Spehn, E. Bazeley-White, M. Weilenmann, M. C. Caldeira, P. G. Dimitrakopoulos, J. Finn, K. Huss-Danell, A. Jumpponen, C. P. H. Mulder, C. Palmborg, J. S. Pereira, D. Siamantziouras, A. C. Terry, A. Y. Troumbis, B. Schmid, M. Loreau. 2010. General stabilizing effects of plant diversity on grassland productivity through population asynchrony and overyieldingEcology 91: 2213-2220. 
Jumpponen, A., Keating, K. Gadbury, G.L., Jones, K.L. and Mattox, J.D. 2010. Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliagePlant Signaling and Behavior 5: 1157-1161
Jumpponen, A. and Jones, K.L. 2010. Seasonally dynamic fungal communities in Quercus macrocarpaphyllosphere differ among urban and rural environmentsNew Phytologist 186: 496-513 
Jumpponen, A. Jones, K.L. and Blair, J. 2010. Vertical distribution of fungal communities in tallgrass prairie soilMycologia 102: 1027-1041. 
Jumpponen, A., Jones, K.L., Mattox, J.D. and Yeage, C. 2010. Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sitesMolecular Ecology 19 (Suppl. 1): 41-53.
Mandyam, K. Loughlin, T., and Jumpponen A. 2010. Isolation and morphological and metabolic characterization of common endophytes in annually burned tallgrass prairieMycologia 102: 813-821.

Nilsson, R.H., Veldre, V., Hartmann, M., Unterseher, M., Amend, A., Bergsten, J., Kristiansson, E., Ryberg, M., Jumpponen, A., Abarenkov, K. 2010. An open source software package for rapid, automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecologyFungal Ecology, 3: 284-287. DOI: 10.1016/j.funeco.2010.05.002

Walker, J.F., Johnson, L.C., Simpson, N.B., Bill, M. and Jumpponen, A. 2010. Application of fungistatics in soil reduces N uptake by an arctic ericoid shrub (Vaccinium vitis-idaea)Mycologia 102: 822-834.


Carlsson, G., Palmborg, C., Jumpponen, A., Scherer-Lorenzen, M., Högberg, P. and Huss-Danell, K. 2009. N2 fixation in three perennial Trifolium species in experimental grasslands of varied plant species richness and compositionPlant Ecology 205: 87-104. DOI 10.1007/s11258-009-9600-9

Coolon, JD, Jones, KL, Carr, BC, Todd, TC, Herman, MA. 2009. C. elegans genomic response to soil bacteria predicts environment-specific genetic effects on life history traits. PLoS Genetics, 5(6):e1000503. Doi:10.1371/journal.pgen.1000503.

Jumpponen, A. 2009. Analysis of rhizosphere fungal communities using rRNA and rDNA. In: Symbiotic Fungi, Soil Biology 18. Ed. Varma, A. and Kharkwal, A.C. Springer-Verlag, Berlin. 29-40
Jumpponen, A. and Jones, K.L. 2009. Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphereNew Phytologist 184: 438-448. 


Anderson T.D., Jin-Clark Y., Begum K., Starkey S.R. & Zhu, K. Y. 2008.  Gene expression profiling reveals decreased expression of two hemoglobin genes associated with increased consumption of oxygen in Chironomus tentans exposed to atrazine:  A possible mechanism for adapting to oxygen deficiency.  Aquatic Toxicol.  86:  148-156.

Fehlberg, S. D., K. A. Ford, M. C. Ungerer and C. J. Ferguson. 2008. Development, characterization and transferability of microsatellite markers for the plant genusPhlox (Polemoniaceae)Molecular Ecology Resources 8: 116-118.

Hogenhout,S.A., Ammar, E.D., Whitfield, A.E., and Redinbaugh, M.G. 2008. Insect vector interactions with persistently transmitted virusesAnnual Review of Phytopathology 46:327-359.

Olsen, K.M. and Ungerer, M.C. (2008). Freezing tolerance and cyanogenesis in white clover (Trifolium repens L. Fabaceae). International Journal of Plant Sciences 169:1141-1147.

Sotelo, P. C., P. Voothuluru, S. Starkey and C. M. Smith. Categories of resistance to the Russian wheat aphid biotype 2 operating in parents of aphid-resistant CIMMYT synthetic wheat linesJ. Econ. Entomol. (submitted). The Tribolium Genome Sequencing Consortium. (2008) The genome of the model beetle and pestTribolium castaneum.  Nature452:949-55.

Ungerer, M.C., Johnson, L.C., Herman, M.A. 2008 Ecological genomics: understanding gene functions in the natural environmentHeredity, 100, 178-183.

Whitfield, A.E., Kumar, N.K.K., Rotenberg, D., Willis, D.K, Ullman, D.E., and German T.L. 2008. Tomato spotted wilt virus glycoprotein GN inhibits virus transmission by thrips. Phytopathology 98:45-50.

Wisely, S.M., Santymire, R.M., Livieri, T.M., Mueting, S.A., Howard, J.G. 2008. Genotypic and phenotypic consequences of reintroduction history: case study of the black-footed ferretConservation Genetics 9:389-399.

Zhen Y and Ungerer MC. (2008) Clinal variation in freezing tolerance among natural accessions of Arabidopsis thalianaNew Phytologist 177:419-427


Hall MC, Dworkin I, Ungerer MC and Purugganan M. (2007) Genetics of micro-environmental canalization in Arabidopsis thalianaProc. Natl. Acad. Sci. USA 104(31): 13717-13722.

Jordan, K.W., M.A. Carbone, A. Yamamota, T.J. Morgan, and T.F.C. Mackay (2007) Quantitative genomics of locomotor behavior in Drosophila melanogasterGenome Biology 8:  R172doi:10.1186/gb-2007-8-8-r172.

Kammenga, J., M. Herman, J. Ouborg, L. Johnson, and R. Breitling. 2007. Microarray challenges in ecology, Trends in Ecology and Evolution. 22, 273-279.

Milliken, G.A., K.A. Garrett, and S.E. Travers.  2007.  Experimental design for two-color microarrays applied in a pre-existing experiment.  Statistical Application in Genetics and Molecular Biology 6, Article 20.

Prabhakar, S., M.-S. Chen, E. N. Elpidina, K. S. Vinokurov, C. M. Smith, and B. Oppert. 2007. Transcriptome analysis of digestive proteases from the yellow mealworm, Tenebrio molitor L. (Coleoptera: Tenebrionidae)Insect Mol. Biol. 16: 455-468.

Rotenberg, D., Jimenez Wells, A., Chapman, E.J., Whitfield, A.E., Goodman, R.M., and Cooperband, L.R. 2007. Soil properties associated with organic matter-mediated bean root rot suppression in field soil amended with fresh and composted paper mill residualsSoil Biology and Biochemistry 39:2936-2948.

M. Saker, S. Adawy, and C. M.  Smith. 2007. Entomological and genetic variation of cultivated barley (Hordeum vulgare) from EgyptGAPP Archives of Phytopathology and Plant Protection. 41 (7), pp. 526-536.

Smith, C.M. and E. V. Boyko. 2007. The molecular bases of plant resistance and defense responses to aphid feeding: current statusEntomol. Exp. Appl. 122: 1–16.

Smith, C.M. MINI REVIEW 2007.  Plant expression of defense response and resistance genes elicited by aphid feeding:Entomologia Experimentalis et Applicata. 2007 Volume 122: pages 1–16.

Travers, S.E., M. D. Smith, J. Bai, S. H. Hulbert, J. E. Leach, P. S. Schnable, A. K. Knapp, G. Milliken, P. Fay, and K. A. Garrett.  2007.  Ecological genomics: making the leap from model systems in the lab to native populations in the field.  Frontiers in Ecology and the Environment 5: 19-24.


Boyko, E. V., C. M. Smith, T. Vankatappa, J. Bruno, Y. Deng, S. R. Starkey, and D. Klaahsen The molecular basis of plant gene expression during aphid invasion: wheat Pto- and Pti-like sequences modulate aphid-wheat interaction. J. Econ. Entomol Volume 99 (4) 2006 pages 1430-1445.

Carbone, M.A., K.W. Jordan, R.F. Lyman, S.T. Harbison, J. Leips, T.J. Morgan, M. DeLuca, P. Awadalla, and T.F.C. Mackay.  Phenotypic variation and natural selection at Catsup, a pleiotropic quantitative trait gene in Drosophila. Current Biology Volume 16 2006 pages 912-919

Das, S., P., S.M. Welch, M. Gui, M. Cochran, A. Wareing, B. Babin, Adding local search to particle swarm optimizationProceedings, World Congress on Computational Intelligence, Vancouver, BC, Canada, July 16-21, 2006, pp. 70-77.

Garrett, K. A., S. H. Hulbert, J. E. Leach, and S. E. Travers. 2006.  Ecological genomics and epidemiology European Journal of Plant Pathology 115: 35-51.

Garrett, K.A., S. P. Dendy, E. E. Frank, M. N. Rouse, and S. E. Travers.  2006.  Climate change effects on plant disease: Genomes to ecosystems Annual Review of Phytopathology 44: 489-509.

Jones, K.L., Todd, T.C., and Herman, M.A., 2006,  Development of taxon-specific markers for high-throughput screening of microbial-feeding nematodes Molecular Ecology Notes,6, 712-714..

Jones, K.L., Todd, T.C., Coolon, J.D., Blair, J. M., and Herman, M.A. 2006, Molecular approach for assessing responses of microbial-feeding nematodes to burning and chronic nitrogen enrichment in a native grassland Molecular Ecology, 152601-2609.

Konakandla, B, Y. Park and D.C. Margolies.  2006.  Whole gene amplification of Chelix-extracted DNA from a single mite: A method for studying genetics of the predatory mite Phytoseiulus persimilis.  Exp. Appl. Acarol. 40: 241-247.

Morgan, T.J. and T.F.C. Mackay.  Quantitative trait loci for thermotolerance phenotypes in Drosophila melanogaster.  Heredity Volume 96 2006 pages 232-242.

Nachappa, P., D.C. Margolies, and J.R. Nechols.  Resource-dependent giving-up time of the predatory mite, Phytoseiulus persimilisJ. Insect Behav. Volume 19 2006 pages 741-752.

Nachappa, P., D.C. Margolies, J.R. Nechols and T. Loughin. 2006. Phytoseiulus persimilis response to herbivore-induced plant volatiles as a function of mite-days.  Experimental and Applied Acarology 40:231-239.

Rollmann, S.M., M.M. Magwire, T.J. Morgan, E.D. Ozsoy, A. Yamamoto, T.F.C. Mackay, and R.R.H. Anholt.  Pleiotropic fitness effects of the Tre1/Gr5a region inDrosophila.  Nature Genetics.  Vol 38 2006 pages 824-829.

Tolmay, V., F. du Toit, and C. M. Smith.  2006.  Registration of Russian wheat aphid resistant near isogenic lines developed in South Africa.  Crop Sci. 46:478-480.

Ungerer, M.C., S. Strakosh, and Y. Zhen. Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation.  Current Biology 2006 Volume 16: pages 872 - 873.

Voothuluru, P., L. Zhu, C. Khajuria, J. Lewis, J. Meng, C. M. Smith, G. E. Wilde and C. A. Baker. Categories and inheritance of resistance in wheat Cereal Introduction 2401 to Russian wheat aphid (Homoptera: Aphididae) biotypes 1 and 2. J. Econ. Entomol Volume 99 (5) 2006 pages 1854-61.

Weinig, C, Brock MT, Dechaine JA, Welch SM.  2006.  Resolving the genetic basis of invasiveness and predicting invasions.  Genetica.  DOI 10.1007/s10709-006-9015-7.

Wilson, R.H., T.J. Morgan, and T.F.C. Mackay.  High resolution mapping of quantitative trait loci affecting increased life span in Drosophila melanogaster.  Genetics Volume 173 2006 pages 1455-1463.


Boina, D., S. Prabhakar, C.M. Smith, S. Starkey, L. Zhu, E. Boyko, and JC Reese. Categories of resistance to greenbug (Homoptera: Aphididae) biotype I in wheats expressing the Gby and Gbz genes. J. Kansas Entomol. Soc. Volume 78 (3) 2005 pages 252-260.

Callahan, HS, Dhanoolal N., Ungerer M.C. Plasticity genes and plasticity costs: a new approach using an Arabidopsis recombinant inbred population New Phytologist Volume 166 2005 pages 129-140.

Koduru, P. ,Welch, S.M., Das, S. Roe, J.L., Urupattur, S. A Multi-Objective Hybrid Genetic Algorithm for a Flowering Time Gene Network Model in A. thaliana”International Conference on Artificial Intelligence, Las Vegas, 2005.

Koduru, P. Das, S.. Welch, S.M., Roe, J.L.,, Lopez-Dee. Z.P. A Co-evolutionary Hybrid Algorithm for Multi-objective Optimization of Gene Regulatory Network ModelsProceedings of the Genetic and Evolutionary Computing Conference, Washington, D. C., 2005.

Koduru, P., Hsu, W.H., Das, S.,Welch, S.M. and Roe, J.L. Dynamical Systems Prediction using Temporal Artificial Neural Networks and Multi-objective Genetic Algorithms IASTED Conference on Computational Intelligence, Calgary, Canada 2005 pages 214-219.

Liu, X.M., C.M. Smith, B.R. Friebe and B.S. Gill. 2005.  Molecular mapping and allelic relationships of Russian wheat aphid resistance genesCrop Science  2005 Volume 45: 2273-2280.

Mackay, T.F.C., S.L. Heinsohn, R.F. Lyman, A.J. Moehring, T.J.Morgan & S.M. Rollmann.  Genetics and genomics of Drosophila mating behavior. for joint publication: In J. Hey, W.M. Fitch, F.J. Ayala, eds. Systematics and the Orgin of the Species.  On Ernst Mayr’s 100th Anniversary. National Academies Press and PNAS Volume 102, 2005, pages 6622-6629.

Morgan, T.J., M.A. Evans, T. Garland Jr., J.G. Swallow, and P.A. Carter.  Molecular and quantitative genetic divergence among populations of house mice with known evolutionary histories.  Heredity Volume 94 2005 pages 518-525.

Rotenberg, D., Kumar, N.K.K., Zeitlow, C., Willis, D.K, German, T.L., Ullman, D.E. and Whitfield, A.E. Tomato spotted wilt virus transmission and vector longevity are determined by virus titer in Frankliniella occidentalis (Pergande). (In progress)

Smith, C.M., E. V. Boyko and S. Starkey.  Differential expression of genes in wheat, Tritucum aestivum L. controlling resistance to the Russian wheat aphid,Diuraphis noxia (Mordvilko).  IOBC wprs Bulletin Volume 28 2005 page 11.

Ungerer, M.C. Priming for genetics in ecology. BioScience Volume 55 (3) 2005 pages 283-285.

Welch, S.M., Dong, Z., Roe, J.L., Das, S.  Flowering time control:  gene network modeling and the link to quantitative genetics.  Austr. J. Ag. Res. Volume 56 2005 pages 919-936.

Welch, S.M., J. L. Roe, S. Das, Z. Cong, R. He, M. B. Kirkham.  Merging genomic control networks and Soil-Plant-Atmosphere-Continuum (SPAC) Models. Agricultural Systems Volume 86 (3) 2005 pages 243-274.

Zhu, L. C., C. M. Smith, and J. C. Reese. Categories of resistance to greenbug (Homoptera: Aphididae) biotype K in wheat lines containing Aegilops tauschii genes. J. Econ. Entomol Volume 98 2005 pages 2260-2265.



Dietzgen, R.G., Calisher, C.H., Kurath, G., Kuzmin, I.V., Rodriguez, L.L., Stone, D.M., Tesh, R.B., Tordo, N., Walker, P.J., Wetzel, T., Whitfield, A.E. 2012. Rhabdoviridae. Pages 686-713 in: Virus taxonomy: classification and nomenclature of viruses: Ninth report of the International Committee on Taxonomy of Viruses. Ed: King, A.M.Q., Adams, M.J., Carstens, E.B., and Lefkowitz, E.J. San Diego: Elsevier.

Garrett, K., ed. F., V. Eviner, and R. Ostfeld, “Applied biodiversity science: Managing emerging diseases in agriculture and linked natural systems.” Chapter in Ecology of Infectious Disease, Princeton University Press. In press.

Garrett, K.A., Jumpponen, A., and Gomez, L. 2010. Emerging plant diseases: What are our best strategies for management? In: Controversies in Science and Technology. Vol 3. Food safety. Ed. Kleinman, D.L., Cloud-Hansen, K., Matta, C., Handelsman, J. Mary Ann Liebert Inc. Publishers. p. 152-160.

Herman, MA; Coolon, JD; Jones, KL; Todd, TC. 2009. Ecological Genomics of Nematode Community Interactions: Model and Non-model Approaches. In Evolutionary Biology from Concept to Application II, ed. by Pierre Pontarotti, Springer: Heidelberg, Germany, p. 303-321.

Marshall, J.L. 2013. Where to look for speciation genes when divergence is driven by postmating, prezygotic isolation. In Speciation: Natural Processes, Genetics, and Biodiversity. P. Michalak (Ed). Nova Science Pub., New York. Pp 193-206.

Redinbaugh, M.G., Whitfield, A.E., and Ammar, E.D. 2012. Cereal Rhabdovirus Interactions with Vectors. In: Rhabdoviruses: Molecular Taxonomy, Evolution, Genomics, Ecology, Cytopathology and Control, R. Dietzgen and I. Kuzmin, eds. Horizon Scientific Press, London, pp. 147-163.

Smith, C. M. 2007. Plant Resistance to Insect and Mites. In: Buntin, D. G., Weiss, M., Pike, K. D., and Webster, J. A. (Eds.). ESA Handbook of Small Grain Insects. Entomological Society of America. (In Press).

Smith. C. M., ed: Plant Resistance to Arthropods – Molecular and Conventional Approaches. 2005 Publisher: Springer, Berlin. 423 pages.
(Report does not included updated information from Joern, Kambhampati, and Wisely as of 6/12/07)